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cBioPortal at UHN

Local deployment and usage guide

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Import Guide

Overview

For cBioPortal at UHN, we use a simplified import process. Using a configuration file, the import wrapper is used to translate a set of pipeline data files into a directory of data which can quickly and correctly be imported into cBioPortal. Generally speaking, this is designed to fail early if the data is incorrect.

When this is done, the import runner can take this directory of data, and update a study within cBioPortal.

Table of contents

  1. The import wrapper
  2. The import runner
  3. Import data raw format
  4. Annotated example import file